waarnemingsrecord: 2023_May_eDNA_ILVO_120_1_RUN2:MiFish_UE-asv0562

Material Sample van Bathycoccus prasinos Eikrem & Throndsen opgenomen op 2023-05-25
   API

Dataset

Gegevenspartner Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)
Gegevensbron 12S eDNA from seawater samples collected within the coastal zone of the Belgian part of the North Sea
WaarnemingsID (dwc:occurrenceID) 2023_May_eDNA_ILVO_120_1_RUN2:MiFish_UE-asv0562
Record type Material Sample
License CC-BY 4.0 (Int)
Geleverd als CC_BY_4_0
Presence/Absence PRESENT
Organisme kwantiteit (dwc:organismQuantity) 14
Materiaal monster ID (dwc:materialSampleID) https://www.ncbi.nlm.nih.gov/biosample/SAMN42316068 | https://www.ncbi.nlm.nih.gov/biosample/SAMN42316167 | https://www.ncbi.nlm.nih.gov/biosample/SAMN42316266
Organisme kwantiteit type (dwc:organismQuantityType) DNA sequence reads
Bemonsteringsprotocol (dwc:samplingProtocol) [Niskin bottles]
Identificatie referenties (dwc:identificationReferences) the custom made 12S reference db can be found atDOI 10.5281/zenodo.13861942
Identificatie opmerkingen (dwc:identificationRemarks) Taxonomy was assigned in three steps on the merged dataset. First, taxonomy was assigned using a custom-made database (12S reference sequences of 122 North Sea fish species; available at  DOI 10.5281/zenodo.13861942) and the naïve Bayesian RDP Classifier (minBoot = 80; Wang et al., 20017). Secondly, unassigned ASVs after the first step were run with blastn v2.12.0 (Altschul et al., 1990) against the custom-made database. In the third step, unassigned ASVs were subjected to BLAST and the GenBank nt database (from August 2023; qcov_hsps_perc= 75%; perc_identity = 97%). The taxonomy for species with identical 12S sequences was set to genus level (Alosa alosa and Alosa fallax, Raja brachyura, Raja montagui, and Raja clavata) or family level (Ammodydes tobianus and Ammodytes marinus, Chelidonichthys lucerna, Chelidonichthys cuculus, and Eutrigla gurnardus). Other ASVs for which taxonomy could not be determined to species level were classified to family or genus level.

Gebeurtenis

Event ID 2023_May_eDNA_ILVO_120_1_RUN2
Identificatie opmerkingen (dwc:identificationRemarks) Taxonomy was assigned in three steps on the merged dataset. First, taxonomy was assigned using a custom-made database (12S reference sequences of 122 North Sea fish species; available at  DOI 10.5281/zenodo.13861942) and the naïve Bayesian RDP Classifier (minBoot = 80; Wang et al., 20017). Secondly, unassigned ASVs after the first step were run with blastn v2.12.0 (Altschul et al., 1990) against the custom-made database. In the third step, unassigned ASVs were subjected to BLAST and the GenBank nt database (from August 2023; qcov_hsps_perc= 75%; perc_identity = 97%). The taxonomy for species with identical 12S sequences was set to genus level (Alosa alosa and Alosa fallax, Raja brachyura, Raja montagui, and Raja clavata) or family level (Ammodydes tobianus and Ammodytes marinus, Chelidonichthys lucerna, Chelidonichthys cuculus, and Eutrigla gurnardus). Other ASVs for which taxonomy could not be determined to species level were classified to family or genus level.
Datum van waarneming 2023-05-25
Geleverd als jaar:2023  maand:5  dag:25 
Bemonsteringsprotocol (dwc:samplingProtocol) Niskin bottles  
Einddag van het jaar 145
Precisie datum DAY
Startdag van het jaar (dwc:startDayOfYear) 145

Taxonomie

Scientific name Bathycoccus prasinos
Identified to rank species
Rijk Plantae
Stam Chlorophyta
Geleverd als "NA"
Class Mamiellophyceae
Orde Mamiellales
Familie Bathycoccaceae
Genus Bathycoccus
Soorten Bathycoccus prasinos
Name match metric exactMatch
Auteursnaam (dwc:scientificNameAuthorship) Eikrem & Throndsen
Name parse type SCIENTIFIC
Taxonomische status (dwc:taxonomicStatus) ACCEPTED

Geospatiaal

Land Belgium
Latitude 51.185
Supplied as: "51.185"
Longitude 2.7012
Supplied as: "2.7012"
Datum EPSG:4326
Supplied datum: "WGS84"
Coordinate precision Unknown
Terrestrial true
Biome TERRESTRIAL
Continent EUROPE
Marine false
Country Code BE

Aanvullende eigenschappen

accepted scientific name Bathycoccus prasinos Eikrem & Throndsen
accepted taxon key 2688072
core id 4997055824
dataset key 8ddac24b-e022-46df-8883-11e4f222142b
family key 4908143
gbif id 4997055824
generic name Bathycoccus
genus key 2688071
has geospatial issues false
kingdom key 6
last crawled 2025-08-07T22:37:29.060Z
last interpreted 2025-08-07T22:38:18.969Z
last parsed 2025-08-07T22:38:18.969Z
order key 1376
phylum key 36
protocol DWC_ARCHIVE
species key 2688072
taxon key 2688072
verbatim scientific name Bathycoccus prasinos

Door gebruiker gemarkeerde problemen 

    Gegevenskwaliteitscontroles

    Testnaam Resultaat
    CONTINENT_COORDINATE_MISMATCH Waarschuwing
    Coordinate uncertainty meters invalid Waarschuwing
    Weergeven/Verbergen 83 passed properties
    Weergeven/Verbergen 5 missing properties
    Weergeven/Verbergen 34 tests that have not been run

    Aanvullende informatie over politieke grenzen

    Belgische Exclusieve economische zone {D9B06511-41DD-4968-91B8-D11ED20F5476}
    Administratief
    Vlaanderen inclusief de exclusief economische zone Vlaams Gewest
    Locatie
    IFBL c0-38
    Meetpunten VMM buffer 0,001 ° NZ120